PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65286.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 366aa    MW: 39198.1 Da    PI: 8.5323
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65286.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.5e-53211521129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lppGfrFhPtdeel+++yL +kv +  ++ +++i+e+d++k+ePw+L+ k + ++ ekewyf+s rd+ky+tg r+nrat +gyWkatgkd+e+ s+
  MLOC_65286.1  21 LPPGFRFHPTDEELITYYLLRKVVDCGFSGARAIAEIDLNKCEPWELQdKaCKATAEKEWYFYSLRDRKYPTGLRTNRATGAGYWKATGKDREIRSA 117
                   79***************************9999**************96434445788*************************************98 PP

           NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                    +g+lvg+kktLvfy+grapkg+kt+Wvmhe+rle
  MLOC_65286.1 118 rNGALVGMKKTLVFYRGRAPKGQKTQWVMHEFRLE 152
                   78899***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5719177IPR003441NAC domain
PROSITE profilePS5100557.11821177IPR003441NAC domain
PfamPF023656.7E-2722151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010160Biological Processformation of organ boundary
GO:0010223Biological Processsecondary shoot formation
GO:0048366Biological Processleaf development
GO:0048504Biological Processregulation of timing of organ formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MERYGSLGMR LDGIGGGGGE LPPGFRFHPT DEELITYYLL RKVVDCGFSG ARAIAEIDLN  60
KCEPWELQDK ACKATAEKEW YFYSLRDRKY PTGLRTNRAT GAGYWKATGK DREIRSARNG  120
ALVGMKKTLV FYRGRAPKGQ KTQWVMHEFR LEGVYAYHFL PNNTTRDEWV IAKIFVKPGA  180
APPSRKARYG LSSAGDTSCF SDSTSVSIGG GGGASASSAP RQQLPDTSSL LAAAHAAADG  240
ESSSYGATGN NNNAAGNCRE LVPCFSTAQM DATLLGIGQY EPASLAVEQP LAFFQGPRLH  300
QAADNLSLPM FLPGGLQSGV SPLGMGGGAF QHWPSSGYEV KLEGSRAPPQ MAVGPGQLDG  360
AYGWGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-482118117169NO APICAL MERISTEM PROTEIN
1ut4_B6e-482118117169NO APICAL MERISTEM PROTEIN
1ut7_A6e-482118117169NO APICAL MERISTEM PROTEIN
1ut7_B6e-482118117169NO APICAL MERISTEM PROTEIN
3swm_A8e-482118120172NAC domain-containing protein 19
3swm_B8e-482118120172NAC domain-containing protein 19
3swm_C8e-482118120172NAC domain-containing protein 19
3swm_D8e-482118120172NAC domain-containing protein 19
3swp_A8e-482118120172NAC domain-containing protein 19
3swp_B8e-482118120172NAC domain-containing protein 19
3swp_C8e-482118120172NAC domain-containing protein 19
3swp_D8e-482118120172NAC domain-containing protein 19
4dul_A6e-482118117169NAC domain-containing protein 19
4dul_B6e-482118117169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00562DAPTransfer from AT5G53950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728990.0AK372899.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3015H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563845.11e-155PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
SwissprotO040172e-81NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2
TrEMBLF2E9S40.0F2E9S4_HORVD; Predicted protein
STRINGMLOC_65286.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99403543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.17e-76NAC family protein